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LOC4347527 double-stranded RNA-binding protein 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347527, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4347527
Gene description
double-stranded RNA-binding protein 5-like
Locus tag
OSNPB_090508500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
DRB2; DRB5; OsDRB2
Expression
Biased expression in flowers (RPKM 11.0), flower buds (RPKM 7.1) and 2 other tissues See more
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Genomic context

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See LOC4347527 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24121893..24123795)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19710753..19712807)

Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET11 Neighboring gene probable protein S-acyltransferase 7 Neighboring gene peroxisomal nicotinamide adenine dinucleotide carrier Neighboring gene multiple organellar RNA editing factor 8, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-binding protein 5
Names
LOC_Os09g33460
dsRNA-binding protein 2
dsRNA-binding protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403899.1 → NP_001390828.1  double-stranded RNA-binding protein 5

    Status: VALIDATED

    Source sequence(s)
    AK058662, AU097110, C74261, CI017184, CI128785, CI137945
    UniProtKB/TrEMBL
    A2Z2Y5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

    Range
    24121893..24123795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015755250.3 → XP_015610736.1  double-stranded RNA-binding protein 5 isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0XPP7, B7E2T6, B7E321, Q0J0H8, Q766V3
    Conserved Domains (2) summary
    cd19907
    Location:1 → 69
    DSRM_AtDRB-like_rpt1; first double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
    cd19908
    Location:86 → 154
    DSRM_AtDRB-like_rpt2; second double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B7E321.1 GenPept UniProtKB/Swiss-Prot:B7E321

Gene LinkOut

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