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LOC4347995 probable ascorbate-specific transmembrane electron transporter 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347995, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4347995
Gene description
probable ascorbate-specific transmembrane electron transporter 1
Locus tag
OSNPB_100118800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 22.6), roots after flowering (RPKM 10.5) and 6 other tissues See more
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Genomic context

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See LOC4347995 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (1195580..1197391, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (1189686..1193680, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene acetylserotonin O-methyltransferase 2-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene probable helicase MAGATAMA 3 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ascorbate-specific transmembrane electron transporter 1
Names
Os10g0118800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    1195580..1197391 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758624.2 → XP_015614110.1  probable ascorbate-specific transmembrane electron transporter 1

    UniProtKB/TrEMBL
    A0A5S6RCA2, A2Z4K3, A3C224, Q7XH60, Q8W5L0
    Conserved Domains (1) summary
    cd08766
    Location:49 → 192
    Cyt_b561_ACYB-1_like; Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1
Nucleotide Protein
Heading Accession and Version

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