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LOC4348212 putative disease resistance RPP13-like protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348212, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4348212
Gene description
putative disease resistance RPP13-like protein 3
Locus tag
OSNPB_100183000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 7.0), roots after flowering (RPKM 4.5) and 5 other tissues See more
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Genomic context

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See LOC4348212 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (5839252..5843802, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (5693444..5697950, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353622 Neighboring gene uncharacterized LOC107275466 Neighboring gene uncharacterized LOC136353624 Neighboring gene uncharacterized LOC112936700

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative disease resistance RPP13-like protein 3
Names
Os10g0183000
probable disease resistance protein At1g58602

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    5839252..5843802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759579.3 → XP_015615065.1  putative disease resistance RPP13-like protein 3

    UniProtKB/TrEMBL
    A0A5S6R7N3, A2Z5J1, A3C323, Q7G6C5, Q94GG0
    Conserved Domains (2) summary
    cd14798
    Location:4 → 123
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    pfam00931
    Location:174 → 416
    NB-ARC; NB-ARC domain

  2. XM_015759577.3 → XP_015615063.1  putative disease resistance RPP13-like protein 3

    UniProtKB/TrEMBL
    A0A5S6R7N3, A2Z5J1, A3C323, Q7G6C5, Q94GG0
    Conserved Domains (2) summary
    cd14798
    Location:4 → 123
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    pfam00931
    Location:174 → 416
    NB-ARC; NB-ARC domain
Nucleotide Protein
Heading Accession and Version

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