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LOC4348229 uncharacterized LOC4348229 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348229, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348229
Gene description
uncharacterized LOC4348229
Locus tag
OSNPB_100188900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4348229 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (6290162..6296074)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (6144576..6150511)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136353616 Neighboring gene uncharacterized LOC136353484 Neighboring gene phosphoglucomutase, chloroplastic Neighboring gene long chain base biosynthesis protein 1c-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4348229
Names
Os10g0188900
protein odr-4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    6290162..6296074
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759478.3 → XP_015614964.1  uncharacterized protein LOC4348229

    UniProtKB/TrEMBL
    A0A5S6RDQ4, A0A979HKA1, A2Z5M7, A3C357, Q53QS3, Q7G4Q1
    Conserved Domains (1) summary
    pfam14778
    Location:29 → 389
    ODR4-like; Olfactory receptor 4-like
Nucleotide Protein
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Research Materials