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LOC4348309 glycine-rich RNA-binding protein 10 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348309, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4348309
Gene description
glycine-rich RNA-binding protein 10
Locus tag
OSNPB_100321700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 86.1), flower buds (RPKM 76.7) and 6 other tissues See more
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Genomic context

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See LOC4348309 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (9252941..9262473, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (8786977..8796618, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene flavonoid 3'-monooxygenase CYP75B3-like Neighboring gene ATP synthase subunit gamma, mitochondrial Neighboring gene uncharacterized LOC136353519 Neighboring gene UDP-glycosyltransferase 83A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine-rich RNA-binding protein 10
Names
Os10g0321700
Os10g0321866
Os10g0322032

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    9252941..9262473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759334.3 → XP_015614820.1  glycine-rich RNA-binding protein 10

    UniProtKB/TrEMBL
    Q0IYG0, Q109W0
    Conserved Domains (1) summary
    cd21608
    Location:32 → 107
    RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins

  2. XM_015759335.3 → XP_015614821.1  glycine-rich RNA-binding protein 10

    UniProtKB/TrEMBL
    Q0IYG0, Q109W0
    Conserved Domains (1) summary
    cd21608
    Location:32 → 107
    RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
Nucleotide Protein
Heading Accession and Version

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