U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4348519 red chlorophyll catabolite reductase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348519, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4348519
Gene description
red chlorophyll catabolite reductase
Locus tag
OSNPB_100389200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RCCR1; OsRCCR1
Expression
Broad expression in leaves before flowering (RPKM 34.1), leaves after flowering (RPKM 15.2) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4348519 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (13537802..13539773, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (12886330..12888549, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276735 Neighboring gene small nucleolar RNA Z188 Neighboring gene small nucleolar RNA Z188 Neighboring gene red chlorophyll catabolite reductase Neighboring gene cold-regulated protein 27

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice. Tang Y, et al. J Plant Physiol, 2011 Nov 1. PMID 21807436

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables red chlorophyll catabolite reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chlorophyll catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
red chlorophyll catabolite reductase 1, chloroplastic
Names
LOC_Os10g25030
OSJNBa0094J09.24
OSJNBb0061I18.22
Os10g0389200
RCC reductase
Red chlorophyll catabolite reductase 1, chloroplastic
red chlorophyll catabolite reductase 1
NP_001409976.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423047.1 → NP_001409976.1  red chlorophyll catabolite reductase 1, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    JN604886
    UniProtKB/Swiss-Prot
    Q0IXZ5, Q338P6, Q94HB3, Q9AYE6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    13537802..13539773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q338P6.1 GenPept UniProtKB/Swiss-Prot:Q338P6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials