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LOC4348540 GDSL esterase/lipase At5g45910 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348540, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348540
Gene description
GDSL esterase/lipase At5g45910
Locus tag
OSNPB_100393800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4348540 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (13783196..13785115)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13131438..13133358)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene signal peptide peptidase-like 1 Neighboring gene GDSL esterase/lipase At1g28590 Neighboring gene GDSL esterase/lipase At1g28570-like Neighboring gene shewanella-like protein phosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDSL esterase/lipase At5g45910; acetylajmalan esterase
Names
Os10g0393800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    13783196..13785115
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757757.3 → XP_015613243.1  GDSL esterase/lipase At5g45910 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XTQ4, A2Z6W6, Q0IXX1, Q7G7C9
    Conserved Domains (1) summary
    cd01837
    Location:32 → 370
    SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...

  2. XM_015757758.3 → XP_015613244.1  acetylajmalan esterase isoform X2

    Conserved Domains (1) summary
    cl01053
    Location:32 → 211
    SGNH_hydrolase; SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely ...
Nucleotide Protein
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