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LOC4348554 uncharacterized LOC4348554 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348554, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4348554
Gene description
uncharacterized LOC4348554
Locus tag
OSNPB_100397200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 99.5), leaves after flowering (RPKM 95.3) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (14006656..14010926, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13353101..13357384, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279131 Neighboring gene uncharacterized LOC107279152 Neighboring gene delta(24)-sterol reductase Neighboring gene protein BIG GRAIN 1-like Neighboring gene uncharacterized LOC136353809

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables TFIIH-class transcription factor complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4348554
Names
Os10g0397200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    14006656..14010926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759170.3 → XP_015614656.1  uncharacterized protein LOC4348554

    UniProtKB/TrEMBL
    A0A0P0XUC3, A3C4G9, Q0IXV1, Q8RU47
    Conserved Domains (1) summary
    cl02153
    Location:27 → 270
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

  2. XM_066304670.1 → XP_066160767.1  uncharacterized protein LOC4348554

    UniProtKB/TrEMBL
    A0A0P0XUC3, A3C4G9, Q0IXV1, Q8RU47

  3. XM_015759171.3 → XP_015614657.1  uncharacterized protein LOC4348554

    UniProtKB/TrEMBL
    A0A0P0XUC3, A3C4G9, Q0IXV1, Q8RU47
    Conserved Domains (1) summary
    cl02153
    Location:27 → 270
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

  4. XM_066304669.1 → XP_066160766.1  uncharacterized protein LOC4348554

    UniProtKB/TrEMBL
    A0A0P0XUC3, A3C4G9, Q0IXV1, Q8RU47
Nucleotide Protein
Heading Accession and Version

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