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LOC4348566 phenylalanine--tRNA ligase alpha subunit, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348566, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348566
Gene description
phenylalanine--tRNA ligase alpha subunit, cytoplasmic
Locus tag
OSNPB_100400800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 31.5), roots before flowering (RPKM 25.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (14191703..14196593, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13537552..13542435, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g22410, mitochondrial Neighboring gene tyrosine decarboxylase 1 Neighboring gene uncharacterized LOC107275261 Neighboring gene uncharacterized LOC4348568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phenylalanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phenylalanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phenylalanine-tRNA ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phenylalanine--tRNA ligase alpha subunit, cytoplasmic
Names
Os10g0400800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    14191703..14196593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757237.3 → XP_015612723.1  phenylalanine--tRNA ligase alpha subunit, cytoplasmic

    UniProtKB/TrEMBL
    A0A8J8XCG8, B8BGP7, B9G5L9, Q0IXT4, Q338I8
    Conserved Domains (1) summary
    PLN02853
    Location:1 → 492
    PLN02853; Probable phenylalanyl-tRNA synthetase alpha chain
Nucleotide Protein
Heading Accession and Version

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