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LOC4348918 auxin response factor 22-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348918, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4348918
Gene description
auxin response factor 22-like
Locus tag
OSNPB_100479900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ARF22
Expression
Broad expression in flowers (RPKM 25.5), flower buds (RPKM 22.3) and 6 other tissues See more
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Genomic context

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See LOC4348918 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (18719229..18724285)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18051786..18056901)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene protein ENHANCED DISEASE RESISTANCE 2-like Neighboring gene uncharacterized LOC136353716 Neighboring gene homeobox-leucine zipper protein HOX9-like Neighboring gene double-stranded RNA-binding protein 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 22
Names
LOC_Os10g33940
OSJNBa0093B11.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423064.1 → NP_001409993.1  auxin response factor 22

    Status: VALIDATED

    Source sequence(s)
    AK318617, CI526511
    UniProtKB/Swiss-Prot
    A0A0P0XVF4, Q7XDB4, Q9AV47
    UniProtKB/TrEMBL
    B8BHI0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    18719229..18724285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9AV47.1 GenPept UniProtKB/Swiss-Prot:Q9AV47

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials