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LOC4348946 uncharacterized LOC4348946 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348946, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348946
Gene description
uncharacterized LOC4348946
Locus tag
OSNPB_100486000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 36.3), mature seeds (RPKM 20.1) and 6 other tissues See more
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Genomic context

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See LOC4348946 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19054979..19059726)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18386531..18391841)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268956 Neighboring gene uncharacterized LOC4348945 Neighboring gene cytochrome P450 86B1 Neighboring gene probable sugar phosphate/phosphate translocator At4g32390 Neighboring gene uncharacterized LOC4348948

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4348946
Names
Os10g0486000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    19054979..19059726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758874.3 → XP_015614360.1  uncharacterized protein LOC4348946

    UniProtKB/TrEMBL
    B8BHK2, B9G6C3, Q0IWV1, Q337J5
    Conserved Domains (1) summary
    COG1418
    Location:15 → 223
    RnaY; HD superfamily phosphodieaserase, includes HD domain of RNase Y [Translation, ribosomal structure and biogenesis, General function prediction only]

RNA

  1. XR_001540727.3 RNA Sequence

  2. XR_010737166.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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