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LOC4348947 cytochrome P450 86B1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4348947, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4348947
Gene description
cytochrome P450 86B1
Locus tag
OSNPB_100486100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots before flowering (RPKM 34.6), roots after flowering (RPKM 3.2) and 3 other tissues See more
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Genomic context

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See LOC4348947 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19058737..19062835, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18390310..18394407, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268956 Neighboring gene uncharacterized LOC4348945 Neighboring gene uncharacterized LOC4348946 Neighboring gene probable sugar phosphate/phosphate translocator At4g32390 Neighboring gene uncharacterized LOC4348948

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 86B1
Names
Os10g0486100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    19058737..19062835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015758873.3 → XP_015614359.1  cytochrome P450 86B1

    UniProtKB/TrEMBL
    A0A0P0XVI2, A3C5W6, Q7XD91, Q8W372
    Conserved Domains (1) summary
    cd11064
    Location:102 → 548
    CYP86A; cytochrome P450 family 86, subfamily A
Nucleotide Protein
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