U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4349113 cytochrome P450 89A2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349113, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4349113
Gene description
cytochrome P450 89A2
Locus tag
OSNPB_100515900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4349113 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20572644..20574515)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19881359..19883255)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2 Neighboring gene cytochrome P450 89A2 Neighboring gene glycine cleavage system H protein, mitochondrial Neighboring gene salt tolerance receptor-like cytoplasmic kinase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cytochrome P450 89A2
Names
Os10g0515900

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    20572644..20574515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757780.3 → XP_015613266.1  cytochrome P450 89A2

    UniProtKB/TrEMBL
    A0A0P0XWB1, A2Z9B7, Q0IWE2, Q7XCU1, Q9FW97
    Conserved Domains (1) summary
    PLN00168
    Location:1 → 516
    PLN00168; Cytochrome P450; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials