U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4349151 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349151, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4349151
Gene description
protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic
Locus tag
OSNPB_100522500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 7.2), flower buds (RPKM 3.9) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4349151 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (20948438..20954206)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20257023..20261538)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene actin cytoskeleton-regulatory complex protein pan-1-like Neighboring gene F-box protein PP2-A13 Neighboring gene protein ARABIDILLO 2 Neighboring gene 2-oxoglutarate-Fe(II) type oxidoreductase hxnY

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytochrome b6f complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic
Names
Os10g0522500

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    20948438..20954206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066304693.1 → XP_066160790.1  protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic

  2. XM_066304694.1 → XP_066160791.1  protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic

  3. XM_015759179.3 → XP_015614665.1  protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic

    UniProtKB/TrEMBL
    Q336Z6
    Conserved Domains (1) summary
    pfam11152
    Location:77 → 288
    CCB2_CCB4; Cofactor assembly of complex C subunit B, CCB2/CCB4

RNA

  1. XR_010736973.1 RNA Sequence

  2. XR_010736974.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials