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LOC4349165 cytochrome P450 704C1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349165, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4349165
Gene description
cytochrome P450 704C1
Locus tag
OSNPB_100525000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 128.0), leaves before flowering (RPKM 83.2) and 5 other tissues See more
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Genomic context

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See LOC4349165 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21103483..21107458, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20412039..20416485, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease Neighboring gene cytochrome P450 704C1 Neighboring gene cytochrome P450 704C1 Neighboring gene glutathione S-transferase U17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 704C1
Names
Os10g0525000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    21103483..21107458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759368.3 → XP_015614854.1  cytochrome P450 704C1 isoform X1

    UniProtKB/TrEMBL
    A0A0P0XWW2, A3C6M9, Q8S7S6
    Conserved Domains (1) summary
    cd11064
    Location:74 → 508
    CYP86A; cytochrome P450 family 86, subfamily A

  2. XM_015759369.3 → XP_015614855.1  cytochrome P450 704C1 isoform X2

    UniProtKB/TrEMBL
    A0A0P0XWG8, A2XV93
    Conserved Domains (1) summary
    PLN03195
    Location:1 → 400
    PLN03195; fatty acid omega-hydroxylase; Provisional

  3. XM_066304751.1 → XP_066160848.1  cytochrome P450 704C1 isoform X3

    UniProtKB/TrEMBL
    A0A0P0XWG8, Q109D2
Nucleotide Protein
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