U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4349216 heavy metal-associated isoprenylated plant protein 39 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349216, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4349216
Gene description
heavy metal-associated isoprenylated plant protein 39
Locus tag
OSNPB_100532300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4349216 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21394034..21395537, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20702047..20703594, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene lysine-specific histone demethylase 1 homolog 3 Neighboring gene uncharacterized LOC112936599 Neighboring gene probable lysophospholipase BODYGUARD 3 Neighboring gene transcription repressor OFP8-like Neighboring gene uncharacterized LOC9270228

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heavy metal-associated isoprenylated plant protein 39
Names
Os10g0532300

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    21394034..21395537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015757394.3 → XP_015612880.1  heavy metal-associated isoprenylated plant protein 39

    UniProtKB/TrEMBL
    A0A0P0XWL7, A2Z9N4, A3C6S1, Q8LN41
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials