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LOC4349267 chitinase 8-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349267, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4349267
Gene description
chitinase 8-like
Locus tag
OSNPB_100542900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Cht2; Cht8; OsChia2a; OsJ_32330
Expression
Broad expression in leaves after flowering (RPKM 158.6), roots after flowering (RPKM 115.3) and 4 other tissues See more
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Genomic context

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See LOC4349267 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21897953..21899867)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21205689..21207511)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9267334 Neighboring gene serine/threonine-protein kinase BSK1-2-like Neighboring gene chitinase 8-like Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in defense response to fungus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase 8
Names
Class II chitinase a
LOC_Os10g39680
OSJNBb0015I11.14
pathogenesis related (PR)-3 chitinase 8
NP_001410021.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423092.1 → NP_001410021.1  chitinase 8 precursor

    Status: VALIDATED

    Source sequence(s)
    AK070067, CI619917
    UniProtKB/Swiss-Prot
    A0A0P0XX79, O80423, Q7XCK6, Q9FWE9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    21897953..21899867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XCK6.1 GenPept UniProtKB/Swiss-Prot:Q7XCK6

Gene LinkOut

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Molecular Biology Databases
Research Materials