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LOC4349368 2-oxoglutarate-dependent dioxygenase 11-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349368, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4349368
Gene description
2-oxoglutarate-dependent dioxygenase 11-like
Gene type
pseudo
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 2.9), leaves after flowering (RPKM 1.6) and 6 other tissues See more
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Genomic context

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See LOC4349368 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22706966..22711006, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22015038..22019824, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate-dependent dioxygenase 11-like Neighboring gene uncharacterized LOC107278970 Neighboring gene 2-oxoglutarate-dependent dioxygenase 11-like Neighboring gene F-box protein At5g07610-like Neighboring gene 2-oxoglutarate-dependent dioxygenase 11-like Neighboring gene uncharacterized LOC4349371

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    22706966..22711006 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials