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LOC4349439 VAN3-binding protein-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349439, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4349439
Gene description
VAN3-binding protein-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4349439 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23214204..23219531, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22521959..22526050, complement)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At3g10240 Neighboring gene uncharacterized LOC9270320 Neighboring gene uncharacterized LOC136353792 Neighboring gene VAN3-binding protein Neighboring gene disease resistance protein Pik-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in auxin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leaf vascular tissue pattern formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phloem or xylem histogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VAN3-binding protein-like; uncharacterized protein LOC4349439

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    23214204..23219531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066305020.1 → XP_066161117.1  VAN3-binding protein-like isoform X2

    UniProtKB/TrEMBL
    A0A5S6RD88, Q0IVI9, Q336Q5

  2. XM_066305021.1 → XP_066161118.1  VAN3-binding protein-like isoform X2

    UniProtKB/TrEMBL
    A0A5S6RD88, Q0IVI9, Q336Q5

  3. XM_066305019.1 → XP_066161116.1  uncharacterized protein LOC4349439 isoform X1

Nucleotide Protein
Heading Accession and Version

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