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LOC4349503 TOM1-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349503, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4349503
Gene description
TOM1-like protein 1
Locus tag
OSNPB_100578000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
tom2
Expression
Ubiquitous expression in leaves after flowering (RPKM 45.0), roots after flowering (RPKM 44.3) and 6 other tissues See more
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Genomic context

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See LOC4349503 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (23744276..23747193)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (23052142..23055058)

Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene inactive poly [ADP-ribose] polymerase RCD1 Neighboring gene glycerol-3-phosphate acyltransferase, chloroplastic Neighboring gene cellulose synthase-like protein D1 Neighboring gene uncharacterized LOC4349506 Neighboring gene putative pentatricopeptide repeat-containing protein At1g16830

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 1
Names
Os10g0578000
target of Myb protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423113.1 → NP_001410042.1  TOM1-like protein 1

    Status: VALIDATED

    Source sequence(s)
    AJ495791, AU082609, CI310624, CI366340
    UniProtKB/TrEMBL
    A2ZAK7, A3C7M7, Q336N2, Q8W3G1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

    Range
    23744276..23747193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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