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LOC4349529 uncharacterized LOC4349529 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349529, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4349529
Gene description
uncharacterized LOC4349529
Locus tag
OSNPB_110101200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 19.8), leaves before flowering (RPKM 18.8) and 6 other tissues See more
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Genomic context

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See LOC4349529 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (76870..85903)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (35581..44610)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene caffeoylshikimate esterase Neighboring gene exocyst complex component EXO70B1 Neighboring gene uncharacterized LOC136353953 Neighboring gene WUSCHEL-related homeobox 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleolar ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4349529
Names
Os11g0101200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    76870..85903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026021109.2 → XP_025876894.1  uncharacterized protein LOC4349529 isoform X1

    UniProtKB/TrEMBL
    C7J9V9
    Conserved Domains (2) summary
    pfam06203
    Location:726 → 769
    CCT; CCT motif
    cl23724
    Location:7 → 229
    PHP; Polymerase and Histidinol Phosphatase domain

  2. XM_026021108.2 → XP_025876893.1  uncharacterized protein LOC4349529 isoform X1

    UniProtKB/TrEMBL
    C7J9V9
    Conserved Domains (2) summary
    pfam06203
    Location:726 → 769
    CCT; CCT motif
    cl23724
    Location:7 → 229
    PHP; Polymerase and Histidinol Phosphatase domain

  3. XM_066305373.1 → XP_066161470.1  uncharacterized protein LOC4349529 isoform X1

  4. XM_066305372.1 → XP_066161469.1  uncharacterized protein LOC4349529 isoform X1

  5. XM_015761578.3 → XP_015617064.1  uncharacterized protein LOC4349529 isoform X1

    UniProtKB/TrEMBL
    C7J9V9
    Conserved Domains (2) summary
    pfam06203
    Location:726 → 769
    CCT; CCT motif
    cl23724
    Location:7 → 229
    PHP; Polymerase and Histidinol Phosphatase domain

  6. XM_015761576.2 → XP_015617062.1  uncharacterized protein LOC4349529 isoform X1

    UniProtKB/TrEMBL
    C7J9V9
    Conserved Domains (2) summary
    pfam06203
    Location:726 → 769
    CCT; CCT motif
    cl23724
    Location:7 → 229
    PHP; Polymerase and Histidinol Phosphatase domain

  7. XM_066305374.1 → XP_066161471.1  uncharacterized protein LOC4349529 isoform X2

  8. XM_066305375.1 → XP_066161472.1  uncharacterized protein LOC4349529 isoform X2

  9. XM_066305377.1 → XP_066161474.1  uncharacterized protein LOC4349529 isoform X3

RNA

  1. XR_010737565.1 RNA Sequence

  2. XR_010737567.1 RNA Sequence

  3. XR_010737566.1 RNA Sequence

Nucleotide Protein
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