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LOC4349593 uncharacterized LOC4349593 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349593, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4349593
Gene description
uncharacterized LOC4349593
Locus tag
OSNPB_110113300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 104.3), leaves after flowering (RPKM 49.4) and 5 other tissues See more
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Genomic context

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See LOC4349593 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (660259..662544)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (618022..620368)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene phosphoglucan phosphatase LSF2, chloroplastic Neighboring gene stress response protein nst1 Neighboring gene uncharacterized LOC107277868 Neighboring gene uncharacterized LOC107279318

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4349593
Names
Os11g0113300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    660259..662544
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759600.3 → XP_015615086.1  uncharacterized protein LOC4349593

    UniProtKB/TrEMBL
    A0A8J8YN05, A2ZAR5, A3C7X9, Q0IV47, Q2RBF4
Nucleotide Protein
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