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LOC4349735 probable calcium-transporting ATPase 8, plasma membrane-type [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349735, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4349735
Gene description
probable calcium-transporting ATPase 8, plasma membrane-type
Locus tag
OSNPB_110140400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ACA8; OsACA8
Expression
Broad expression in roots after flowering (RPKM 28.4), roots before flowering (RPKM 27.0) and 5 other tissues See more
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Genomic context

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See LOC4349735 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1903773..1910117)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1858949..1865297)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene putative gamma-glutamylcyclotransferase At3g02910 Neighboring gene uncharacterized protein At2g39790, mitochondrial Neighboring gene uncharacterized LOC136353949 Neighboring gene NAC domain-containing protein 6-like Neighboring gene calcium-binding protein CBP-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable calcium-transporting ATPase 8, plasma membrane-type
Names
Ca(2+)-ATPase
LOC_Os11g04460
probable calcium-transporting ATPase 5, plasma membrane-type
NP_001410079.1
XP_015617348.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423150.1 → NP_001410079.1  probable calcium-transporting ATPase 8, plasma membrane-type

    Status: VALIDATED

    Source sequence(s)
    AK063105, AK242630, AP014967
    UniProtKB/Swiss-Prot
    Q2RAS0
    UniProtKB/TrEMBL
    A2ZB95, A3C8G9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    1903773..1910117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761862.3 → XP_015617348.1  probable calcium-transporting ATPase 8, plasma membrane-type isoform X1

    UniProtKB/TrEMBL
    A2ZB95
    Conserved Domains (7) summary
    TIGR01517
    Location:62 → 1002
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:191 → 430
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:827 → 998
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:105 → 171
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12515
    Location:8 → 52
    CaATP_NAI; Ca2+-ATPase N terminal autoinhibitory domain
    pfam12710
    Location:647 → 752
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:493 → 577
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2RAS0.1 GenPept UniProtKB/Swiss-Prot:Q2RAS0

Gene LinkOut

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Research Materials