U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4349772 peptidyl-prolyl cis-trans isomerase FKBP42 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349772, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4349772
Gene description
peptidyl-prolyl cis-trans isomerase FKBP42
Locus tag
OSNPB_110148300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 17.6), leaves after flowering (RPKM 16.5) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4349772 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (2275067..2279154)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2229810..2233902)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene cation/calcium exchanger 5 Neighboring gene protein trichome birefringence-like 10 Neighboring gene uncharacterized LOC4349773 Neighboring gene pyruvate kinase 1, cytosolic-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
peptidyl-prolyl cis-trans isomerase FKBP42
Names
Os11g0148300

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    2275067..2279154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761347.3 → XP_015616833.1  peptidyl-prolyl cis-trans isomerase FKBP42

    UniProtKB/TrEMBL
    A0A8J8Y193, A3C8M6, B8BIF6, Q2RAK4
    Conserved Domains (3) summary
    TIGR00990
    Location:182 → 344
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:242 → 271
    TPR; TPR repeat [structural motif]
    pfam00254
    Location:74 → 168
    FKBP_C; FKBP-type peptidyl-prolyl cis-trans isomerase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials