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LOC4349944 short-chain dehydrogenase TIC 32, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349944, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4349944
Gene description
short-chain dehydrogenase TIC 32, chloroplastic
Locus tag
OSNPB_110181700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 15.4), leaves before flowering (RPKM 13.5) and 4 other tissues See more
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Genomic context

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See LOC4349944 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4143015..4145559)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4094566..4097142)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene nifU-like protein 1, chloroplastic Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene short-chain dehydrogenase TIC 32, chloroplastic Neighboring gene uncharacterized LOC4349946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
short-chain dehydrogenase TIC 32, chloroplastic
Names
Os11g0181700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    4143015..4145559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759644.3 → XP_015615130.1  short-chain dehydrogenase TIC 32, chloroplastic

    UniProtKB/TrEMBL
    B8BJF9, B9G9Q3, Q0IU69
    Conserved Domains (1) summary
    cd05327
    Location:37 → 313
    retinol-DH_like_SDR_c_like; retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs
Nucleotide Protein
Heading Accession and Version

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