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LOC4349962 aspartic proteinase Asp1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349962, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4349962
Gene description
aspartic proteinase Asp1-like
Locus tag
OSNPB_110184800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ASP1; OSAP1; OsAsp1; OsJ_031884
Expression
Restricted expression toward flower buds (RPKM 145.6) See more
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Genomic context

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Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4346864..4352396)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4292151..4297482)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene putative beta-glucosidase 35 Neighboring gene aspartic proteinase Asp1-like Neighboring gene NAC domain-containing protein 71-like Neighboring gene uncharacterized LOC136353892

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartic proteinase Asp1
Names
LOC_Os11g08200
nucellin-like protein
NP_001391379.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001404450.1 → NP_001391379.1  aspartic proteinase Asp1 precursor

    Status: VALIDATED

    Source sequence(s)
    AP014967, CI520708, CI741651, CI752870, CV731966, JN944371
    UniProtKB/Swiss-Prot
    Q0IU52, Q53NF8, Q6YNY7, Q6YNY8, Q71SA7
    UniProtKB/TrEMBL
    B7F348

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    4346864..4352396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0IU52.1 GenPept UniProtKB/Swiss-Prot:Q0IU52

Gene LinkOut

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Molecular Biology Databases
Research Materials