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LOC4349997 B3 domain-containing protein Os11g0197600-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4349997, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4349997
Gene description
B3 domain-containing protein Os11g0197600-like
Locus tag
OSNPB_110197600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 15.1), leaves before flowering (RPKM 7.3) and 6 other tissues See more
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Genomic context

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See LOC4349997 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (4950302..4955586, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (4894703..4899918, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable magnesium transporter NIPA4 Neighboring gene uncharacterized LOC4349996 Neighboring gene probable hexosyltransferase MUCI70 Neighboring gene uncharacterized LOC4349999

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing protein Os11g0197600
Names
LOC_Os11g09160

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423178.1 → NP_001410107.1  B3 domain-containing protein Os11g0197600

    Status: VALIDATED

    Source sequence(s)
    AK067571, AK101941, CI426610, CI686860
    UniProtKB/Swiss-Prot
    A0A0P0XZV8, Q2R9D2, Q53LR2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    4950302..4955586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2R9D2.1 GenPept UniProtKB/Swiss-Prot:Q2R9D2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials