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LOC4350029 uncharacterized LOC4350029 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350029, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4350029
Gene description
uncharacterized LOC4350029
Locus tag
OSNPB_110206600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4350029 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5428348..5431202)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5372641..5375536)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor MTERF8, chloroplastic Neighboring gene transcription termination factor MTERF15, mitochondrial Neighboring gene extra-large guanine nucleotide-binding protein 3 Neighboring gene transcriptional corepressor SEUSS

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4350029
Names
Os11g0206600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    5428348..5431202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760071.3 → XP_015615557.1  uncharacterized protein LOC4350029

    UniProtKB/TrEMBL
    A2ZCG0, B9G9W9, Q0ITZ2, Q53LJ5
    Conserved Domains (1) summary
    cl19765
    Location:152 → 359
    mTERF

RNA

  1. XR_003239188.2 RNA Sequence

  2. XR_001541060.3 RNA Sequence

  3. XR_001541061.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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