U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4350047 putative F-box protein At3g58860 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350047, updated on 13-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4350047
Gene description
putative F-box protein At3g58860
Locus tag
OSNPB_110209600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4350047 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5701680..5704495, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5645601..5648434, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g58930 Neighboring gene F-box/LRR-repeat protein At3g59200-like Neighboring gene phosphatidylinositol 4-kinase beta 1 Neighboring gene uncharacterized LOC4350049

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative F-box protein At3g58860
Names
F-box domain-containing protein
Os11g0209600

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    5701680..5704495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760308.3 → XP_015615794.1  putative F-box protein At3g58860

    UniProtKB/TrEMBL
    A0A0P0Y074, Q0ITX4, Q2R905
    Conserved Domains (3) summary
    COG4886
    Location:200 → 299
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00032
    Location:223 → 245
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:92 → 131
    F-box; F-box domain

  2. XM_015760307.3 → XP_015615793.1  putative F-box protein At3g58860

    UniProtKB/TrEMBL
    A0A0P0Y074, Q0ITX4, Q2R905
    Conserved Domains (3) summary
    COG4886
    Location:200 → 299
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00032
    Location:223 → 245
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:92 → 131
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials