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LOC4350051 peroxidase 43 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350051, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4350051
Gene description
peroxidase 43
Locus tag
OSNPB_110210100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
prx132; prx133
Expression
Biased expression in milk grains (RPKM 19.2), flowers (RPKM 8.1) and 1 other tissue See more
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Genomic context

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See LOC4350051 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5755950..5758161, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5699966..5702119, complement)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4350049 Neighboring gene uncharacterized LOC4350050 Neighboring gene alcohol dehydrogenase 1 Neighboring gene uncharacterized LOC107279506 Neighboring gene uncharacterized LOC107277320

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasmodesma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxidase 43
Names
Os11g0210100
class III peroxidase 132
class III peroxidase 133

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    5755950..5758161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760543.3 → XP_015616029.1  peroxidase 43

    UniProtKB/TrEMBL
    Q5U1G0, Q5U1G1, Q9LLP7
    Conserved Domains (1) summary
    cd00693
    Location:30 → 333
    secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
Nucleotide Protein
Heading Accession and Version

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