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LOC4350176 chlorophyll a-b binding protein CP26, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350176, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4350176
Gene description
chlorophyll a-b binding protein CP26, chloroplastic
Locus tag
OSNPB_110242800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 1254.9), roots after flowering (RPKM 704.4) and 4 other tissues See more
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Genomic context

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See LOC4350176 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8092636..8095112)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7659665..7662183)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene glucuronoxylan 4-O-methyltransferase 2 Neighboring gene uncharacterized LOC4350175 Neighboring gene uncharacterized LOC112936911 Neighboring gene uncharacterized LOC136354135

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plastoglobule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chlorophyll a-b binding protein CP26, chloroplastic
Names
Os11g0242800
chlorophyll a/b binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    8092636..8095112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015761670.3 → XP_015617156.1  chlorophyll a-b binding protein CP26, chloroplastic

    UniProtKB/TrEMBL
    A0A1L2JKK6, A2ZD01, A3CA44, Q53N83
    Conserved Domains (1) summary
    cl02879
    Location:65 → 268
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
Heading Accession and Version

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