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LOC4350193 putative protease Do-like 14 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350193, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4350193
Gene description
putative protease Do-like 14
Locus tag
OSNPB_110246600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in mature seeds (RPKM 7.3), flowers (RPKM 5.0) and 6 other tissues See more
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Genomic context

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See LOC4350193 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (8342106..8350048)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (7909213..7917482)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At2g44130 Neighboring gene glutathione S-transferase T3-like Neighboring gene protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 Neighboring gene ankyrin repeat protein SKIP35 Neighboring gene uncharacterized LOC4350195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative protease Do-like 14
Names
Os11g0246600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    8342106..8350048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760082.3 → XP_015615568.1  putative protease Do-like 14

    UniProtKB/TrEMBL
    B8BJW6
    Conserved Domains (1) summary
    TIGR02037
    Location:173 → 462
    degP_htrA_DO; periplasmic serine protease, Do/DeqQ family

  2. XM_066305775.1 → XP_066161872.1  putative protease Do-like 14

    UniProtKB/TrEMBL
    B8BJW6

RNA

  1. XR_010737878.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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