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LOC4350527 bifunctional dihydrofolate reductase-thymidylate synthase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350527, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4350527
Gene description
bifunctional dihydrofolate reductase-thymidylate synthase
Locus tag
OSNPB_110484400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4350527 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (18973052..18980307)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (17054016..17061424)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 Neighboring gene DNA replication licensing factor MCM2-like Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic-like Neighboring gene uncharacterized LOC107279510 Neighboring gene uncharacterized LOC107277424

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dihydrofolate reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thymidylate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dTMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in one-carbon metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tetrahydrofolate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional dihydrofolate reductase-thymidylate synthase
Names
Os11g0484400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    18973052..18980307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066305489.1 → XP_066161586.1  bifunctional dihydrofolate reductase-thymidylate synthase isoform X1

  2. XM_015759599.3 → XP_015615085.1  bifunctional dihydrofolate reductase-thymidylate synthase isoform X2

    UniProtKB/TrEMBL
    B9GAQ2, Q2R481
    Conserved Domains (1) summary
    PTZ00164
    Location:14 → 521
    PTZ00164; bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials