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LOC4350762 uncharacterized LOC4350762 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350762, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4350762
Gene description
uncharacterized LOC4350762
Locus tag
OSNPB_110573200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 32.0), roots after flowering (RPKM 17.8) and 6 other tissues See more
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Genomic context

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See LOC4350762 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (23459001..23462241)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21523857..21527169)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 19 Neighboring gene ubiquitin C-terminal hydrolase 12 Neighboring gene uncharacterized LOC112937001 Neighboring gene E3 ubiquitin-protein ligase PUB22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4350762
Names
Os11g0573200
zinc finger CCHC domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    23459001..23462241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015759650.3 → XP_015615136.1  uncharacterized protein LOC4350762 isoform X1

    UniProtKB/TrEMBL
    B8BKE4
    Conserved Domains (1) summary
    PTZ00368
    Location:180 → 342
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

  2. XM_015759651.3 → XP_015615137.1  uncharacterized protein LOC4350762 isoform X2

    UniProtKB/TrEMBL
    B8BKE4
    Conserved Domains (1) summary
    PTZ00368
    Location:178 → 340
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
Nucleotide Protein
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