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LOC4350873 ABC transporter F family member 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4350873, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4350873
Gene description
ABC transporter F family member 5
Locus tag
OSNPB_110603200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots after flowering (RPKM 121.7), leaves after flowering (RPKM 64.5) and 4 other tissues See more
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Genomic context

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See LOC4350873 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (25179114..25183029)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (23230117..23234075)

Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269043 Neighboring gene U6 spliceosomal RNA Neighboring gene UBP1-associated protein 2A-like Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter F family member 5
Names
Os11g0603200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

    Range
    25179114..25183029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762281.2 → XP_015617767.1  ABC transporter F family member 5

    UniProtKB/TrEMBL
    B9G894, Q0IRR5, Q2R1J1
    Conserved Domains (4) summary
    cd03221
    Location:423 → 615
    ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
    COG0488
    Location:97 → 629
    Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
    pfam12848
    Location:325 → 412
    ABC_tran_Xtn; ABC transporter
    cl21455
    Location:111 → 268
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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