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LOC4351426 protein ZINC INDUCED FACILITATOR-LIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351426, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4351426
Gene description
protein ZINC INDUCED FACILITATOR-LIKE 1
Locus tag
OSNPB_120133000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves after flowering (RPKM 2.6), flower buds (RPKM 2.5) and 6 other tissues See more
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Genomic context

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See LOC4351426 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1619585..1625522, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1595244..1601104, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z247 Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1 Neighboring gene uncharacterized LOC4351425 Neighboring gene large ribosomal subunit protein uL10-like Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ZINC INDUCED FACILITATOR-LIKE 1
Names
Os12g0133000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    1619585..1625522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762581.3 → XP_015618067.1  protein ZINC INDUCED FACILITATOR-LIKE 1

    UniProtKB/TrEMBL
    A0A0P0XYI3, A0A0P0Y6M3
    Conserved Domains (1) summary
    cd17330
    Location:50 → 474
    MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters
Nucleotide Protein
Heading Accession and Version

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