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LOC4351434 uncharacterized LOC4351434 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351434, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4351434
Gene description
uncharacterized LOC4351434
Locus tag
OSNPB_120134000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 13.9), flowers (RPKM 12.2) and 6 other tissues See more
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Genomic context

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See LOC4351434 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1695997..1699658)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1671305..1675164)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable auxin efflux carrier component 1d Neighboring gene M phase phosphoprotein 10 Neighboring gene uncharacterized LOC4351436 Neighboring gene uncharacterized LOC107278090 Neighboring gene uncharacterized LOC136354650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ketone body biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4351434
Names
Os12g0134000
hydroxymethylglutaryl-CoA lyase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    1695997..1699658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306552.1 → XP_066162649.1  uncharacterized protein LOC4351434 isoform X2

    UniProtKB/TrEMBL
    B7ECU3, Q0IQA3

  2. XM_015764484.3 → XP_015619970.1  uncharacterized protein LOC4351434 isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y1F4, A2ZHV1, A3C8F2, Q2QY32
    Conserved Domains (1) summary
    PLN02746
    Location:47 → 387
    PLN02746; hydroxymethylglutaryl-CoA lyase
Nucleotide Protein
Heading Accession and Version

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