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LOC4351617 CBS domain-containing protein CBSCBSPB3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351617, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4351617
Gene description
CBS domain-containing protein CBSCBSPB3
Locus tag
OSNPB_120169400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 24.1), leaves before flowering (RPKM 17.8) and 6 other tissues See more
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Genomic context

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See LOC4351617 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3559069..3564099, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3531324..3536423, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278484 Neighboring gene glutathione S-transferase T3 Neighboring gene fructose-bisphosphate aldolase, chloroplastic-like Neighboring gene gamma carbonic anhydrase 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CBS domain-containing protein CBSCBSPB3
Names
Os12g0169400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    3559069..3564099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762616.3 → XP_015618102.1  CBS domain-containing protein CBSCBSPB3

    UniProtKB/TrEMBL
    A0A023H7V6, A0A5S6RBY1, B9GC28, Q0IPT3, Q2QX49
    Conserved Domains (3) summary
    cd06409
    Location:410 → 493
    PB1_MUG70; The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell ...
    cd17781
    Location:61 → 177
    CBS_pair_MUG70_1; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat1
    cd17782
    Location:230 → 346
    CBS_pair_MUG70_2; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains similar to MUG70 repeat2
Nucleotide Protein
Heading Accession and Version

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