U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4351957 probable solanesyl-diphosphate synthase 3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351957, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4351957
Gene description
probable solanesyl-diphosphate synthase 3, chloroplastic
Locus tag
OSNPB_120271700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4351957 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9976461..9983972, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9915255..9922702, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene cytosolic sulfotransferase 12 Neighboring gene WEB family protein At5g55860 Neighboring gene uncharacterized LOC136354685 Neighboring gene uncharacterized LOC9269660 Neighboring gene disease resistance protein RGA5-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables prenyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isoprenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plastoquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable solanesyl-diphosphate synthase 3, chloroplastic
Names
Os12g0271700

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    9976461..9983972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764714.3 → XP_015620200.1  probable solanesyl-diphosphate synthase 3, chloroplastic

    UniProtKB/Swiss-Prot
    A0A0P0Y8W6, Q0INZ4, Q2QU65
    UniProtKB/TrEMBL
    B8AZL8
    Conserved Domains (1) summary
    PLN02857
    Location:47 → 414
    PLN02857; octaprenyl-diphosphate synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials