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LOC4352037 uncharacterized LOC4352037 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352037, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4352037
Gene description
uncharacterized LOC4352037
Locus tag
OSNPB_120403800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4352037 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (12501859..12514430)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (12075092..12087734)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354809 Neighboring gene uncharacterized LOC136354651 Neighboring gene uncharacterized LOC136354843 Neighboring gene uncharacterized LOC112937363

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR AU-rich region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4352037
Names
Os12g0403800
exosome complex component RRP42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    12501859..12514430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765042.3 → XP_015620528.1  uncharacterized protein LOC4352037

    UniProtKB/TrEMBL
    A0A8J8YJV7, B9G2A0, Q0INS4, Q2QT85
    Conserved Domains (1) summary
    cd11367
    Location:4 → 275
    RNase_PH_RRP42; RRP42 subunit of eukaryotic exosome
Nucleotide Protein
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