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LOC4352127 subtilisin-chymotrypsin inhibitor-2A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352127, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4352127
Gene description
subtilisin-chymotrypsin inhibitor-2A
Locus tag
OSNPB_120437800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Sci1
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Genomic context

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See LOC4352127 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (14839669..14840324, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC136354689 Neighboring gene probable histone H2A.7 Neighboring gene uncharacterized LOC4352129

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089046.1 Chromosome 12 Reference ASM3414082v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to wounding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
subtilisin-chymotrypsin inhibitor-2A
Names
Os12g0437800
subitilisin-chymotrypsin inhibitor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    14839669..14840324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306254.1 → XP_066162351.1  subtilisin-chymotrypsin inhibitor-2A

    UniProtKB/TrEMBL
    Q0INK9, Q5EII3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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