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LOC4352204 uncharacterized LOC4352204 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352204, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352204
Gene description
uncharacterized LOC4352204
Locus tag
OSNPB_120477600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 25.1), flowers (RPKM 24.4) and 6 other tissues See more
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Genomic context

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See LOC4352204 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (17891699..17898695, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (17406575..17413873, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA1 Neighboring gene NAC domain-containing protein 83 Neighboring gene uncharacterized LOC4352205 Neighboring gene GEM-like protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein LOC4352204

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    17891699..17898695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763044.3 → XP_015618530.1  uncharacterized protein LOC4352204

    UniProtKB/TrEMBL
    B8BPL8, B9GD40, Q0IND8
Nucleotide Protein
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