U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4352264 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352264, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4352264
Gene description
NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
Locus tag
OSNPB_120498500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves before flowering (RPKM 111.6), roots after flowering (RPKM 36.8) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4352264 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (19405596..19408033, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (18918215..18920685, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266982 Neighboring gene cell division topological specificity factor homolog, chloroplastic Neighboring gene uncharacterized LOC136354500 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene uncharacterized LOC4352265

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of NAD(P)H dehydrogenase complex (plastoquinone) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
Names
Os12g0498500

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    19405596..19408033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763427.2 → XP_015618913.1  NAD(P)H-quinone oxidoreductase subunit U, chloroplastic

    UniProtKB/TrEMBL
    Q2QQD1
    Conserved Domains (1) summary
    cl02542
    Location:114 → 175
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials