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LOC4352353 small ribosomal subunit protein uS10m [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352353, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352353
Gene description
small ribosomal subunit protein uS10m
Locus tag
OSNPB_120517200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
rps10
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Genomic context

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See LOC4352353 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (20595656..20597676)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (20105698..20107753)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 14 Neighboring gene F-box/LRR-repeat protein 14 Neighboring gene uncharacterized LOC136354638 Neighboring gene uncharacterized LOC136354589

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein uS10m
Names
Os12g0517200
mitochondrial ribosomal protein S10
ribosomal protein S10, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    20595656..20597676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026022235.2 → XP_025878020.1  small ribosomal subunit protein uS10m

    UniProtKB/TrEMBL
    A0A8J8XP91, A2ZL39, A3CHW8, Q0IN01, Q9LRH5
    Conserved Domains (1) summary
    cl00314
    Location:3 → 63
    Ribosomal_S10; Ribosomal protein S10p/S20e

  2. XM_015762839.3 → XP_015618325.1  small ribosomal subunit protein uS10m

    UniProtKB/TrEMBL
    A0A8J8XP91, A2ZL39, A3CHW8, Q0IN01, Q9LRH5
    Conserved Domains (1) summary
    cl00314
    Location:3 → 63
    Ribosomal_S10; Ribosomal protein S10p/S20e

  3. XM_015762838.3 → XP_015618324.1  small ribosomal subunit protein uS10m

    UniProtKB/TrEMBL
    A0A8J8XP91, A2ZL39, A3CHW8, Q0IN01, Q9LRH5
    Conserved Domains (1) summary
    cl00314
    Location:3 → 63
    Ribosomal_S10; Ribosomal protein S10p/S20e
Nucleotide Protein
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