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LOC4352484 trafficking protein particle complex II-specific subunit 130 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352484, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4352484
Gene description
trafficking protein particle complex II-specific subunit 130 homolog
Locus tag
OSNPB_120554400
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TRS130
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Genomic context

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See LOC4352484 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23206259..23216630, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22518832..22529225, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA Z159/U59 Neighboring gene small nucleolar RNA snoR137 Neighboring gene uncharacterized LOC4352485 Neighboring gene probable polygalacturonase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex II-specific subunit 130 homolog
Names
LOC_Os12g36760
TRAPP II-specific subunit 130 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423562.1 → NP_001410491.1  trafficking protein particle complex II-specific subunit 130 homolog

    Status: VALIDATED

    Source sequence(s)
    AK072345, CI335069, CI591841
    UniProtKB/Swiss-Prot
    A0A0P0YBB0, Q2QNU0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    23206259..23216630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015764629.3 → XP_015620115.1  trafficking protein particle complex II-specific subunit 130 homolog isoform X1

    UniProtKB/TrEMBL
    B8BMF7
    Conserved Domains (2) summary
    pfam11817
    Location:363 → 430
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:907 → 990
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QNU0.1 GenPept UniProtKB/Swiss-Prot:Q2QNU0

Gene LinkOut

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Molecular Biology Databases
Research Materials