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LOC4352494 protein DEHYDRATION-INDUCED 19 homolog 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352494, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352494
Gene description
protein DEHYDRATION-INDUCED 19 homolog 4
Locus tag
OSNPB_120556100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 11.8), flower buds (RPKM 11.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23304414..23309801)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22616767..22622273)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like protein D4 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene protein SAR DEFICIENT 1 Neighboring gene calmodulin-binding protein 60 A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein DEHYDRATION-INDUCED 19 homolog 4
Names
Os12g0556100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    23304414..23309801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762832.3 → XP_015618318.1  protein DEHYDRATION-INDUCED 19 homolog 4 isoform X1

    UniProtKB/TrEMBL
    B7FA64, B9GDQ0
    Conserved Domains (2) summary
    pfam05605
    Location:42 → 91
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam14571
    Location:116 → 211
    Di19_C; Stress-induced protein Di19, C-terminal

  2. XM_015762833.3 → XP_015618319.1  protein DEHYDRATION-INDUCED 19 homolog 4 isoform X2

    UniProtKB/TrEMBL
    Q2QNS5
    Conserved Domains (2) summary
    pfam05605
    Location:37 → 87
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding
    pfam14571
    Location:112 → 207
    Di19_C; Stress-induced protein Di19, C-terminal
Nucleotide Protein
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