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LOC4352498 calmodulin-binding protein 60 D [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352498, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352498
Gene description
calmodulin-binding protein 60 D
Locus tag
OSNPB_120556500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in leaves after flowering (RPKM 45.4), roots after flowering (RPKM 34.6) and 2 other tissues See more
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Genomic context

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See LOC4352498 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23335908..23344136)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22648086..22656259)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene calmodulin-binding protein 60 A Neighboring gene uncharacterized LOC4352497 Neighboring gene uncharacterized LOC4352499 Neighboring gene uncharacterized LOC9271890

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of salicylic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding protein 60 D
Names
Os12g0556500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    23335908..23344136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763153.3 → XP_015618639.1  calmodulin-binding protein 60 D

    UniProtKB/TrEMBL
    B8BMG4, Q0IMP2, Q2QNS0
    Conserved Domains (1) summary
    pfam07887
    Location:183 → 474
    Calmodulin_bind; Calmodulin binding protein-like
Nucleotide Protein
Heading Accession and Version

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