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LOC4352529 prefoldin subunit 3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352529, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4352529
Gene description
prefoldin subunit 3
Locus tag
OSNPB_120562900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4352529 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23769254..23773808)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23079987..23084545)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase SIS8 Neighboring gene ABC transporter C family member 10 Neighboring gene probable glycerol-3-phosphate acyltransferase 3 Neighboring gene transfer RNA glycine (anticodon UCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tubulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule-based process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tubulin complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of prefoldin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prefoldin subunit 3
Names
Os12g0562900
probable prefoldin subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    23769254..23773808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765225.3 → XP_015620711.1  prefoldin subunit 3

    UniProtKB/TrEMBL
    A0A8J8XTI6, B9GDS8, Q0IML4, Q2QNJ8
    Conserved Domains (1) summary
    pfam02996
    Location:60 → 179
    Prefoldin; Prefoldin subunit
Nucleotide Protein
Heading Accession and Version

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