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LOC4352540 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352540, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4352540
Gene description
disease resistance protein RGA5-like
Locus tag
OSNPB_120564800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4352540 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23856479..23861497, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23166968..23172099, complement)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene psbP domain-containing protein 1, chloroplastic Neighboring gene uncharacterized LOC4352539 Neighboring gene uncharacterized LOC4352541 Neighboring gene disease resistance protein RGA5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
disease resistance protein RGA5-like
Names
Os12g0564800
Os12g37740-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    23856479..23861497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763100.3 → XP_015618586.1  disease resistance protein RGA5-like isoform X1

    UniProtKB/TrEMBL
    A2ZLQ1, A3CIH5
    Conserved Domains (4) summary
    COG4886
    Location:628 → 838
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14798
    Location:37 → 157
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:631 → 653
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:201 → 450
    NB-ARC; NB-ARC domain

  2. XM_015763099.3 → XP_015618585.1  disease resistance protein RGA5-like isoform X1

    UniProtKB/TrEMBL
    A2ZLQ1, A3CIH5
    Conserved Domains (4) summary
    COG4886
    Location:628 → 838
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14798
    Location:37 → 157
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:631 → 653
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:201 → 450
    NB-ARC; NB-ARC domain

  3. XM_015763101.3 → XP_015618587.1  disease resistance protein RGA5-like isoform X2

    UniProtKB/TrEMBL
    A2ZLQ1, A3CIH5, Q0IMK3, Q2QNI0
    Conserved Domains (4) summary
    COG4886
    Location:626 → 836
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14798
    Location:35 → 155
    RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
    sd00033
    Location:629 → 651
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:199 → 448
    NB-ARC; NB-ARC domain
Nucleotide Protein
Heading Accession and Version

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