U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4352558 diaminopimelate epimerase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4352558, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4352558
Gene description
diaminopimelate epimerase, chloroplastic-like
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
DAPF; OsJ_035115
Expression
Ubiquitous expression in flower buds (RPKM 45.3), flowers (RPKM 44.4) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (24007866..24013259)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (23318126..23323392)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene UNC93-like protein 3 Neighboring gene UNC93-like protein 3 Neighboring gene myb-related protein MYBAS2-like Neighboring gene uncharacterized LOC136354626

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables diaminopimelate epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysine biosynthetic process via diaminopimelate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
diaminopimelate epimerase, chloroplastic
Names
DAP epimerase
LOC_Os12g37960
NP_001410513.1
NP_001410514.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423584.1 → NP_001410513.1  diaminopimelate epimerase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AU164318, CB654494, CB654495, CI511727
    UniProtKB/Swiss-Prot
    A2ZLS4, Q2QNF7

  2. NM_001423585.1 → NP_001410514.1  diaminopimelate epimerase, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AU164318, CB654494, CB654495, CI115278, CI511727
    UniProtKB/Swiss-Prot
    A2ZLS4, Q2QNF7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    24007866..24013259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2QNF7.1 GenPept UniProtKB/Swiss-Prot:Q2QNF7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials